PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603727.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 243aa    MW: 28263.1 Da    PI: 9.7152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.7e-17550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+q+G+++W++Ia+++  gR++k+c++rw++ 
   XP_013603727.1  5 RGHWRPAEDKKLRELVQQFGPHNWNAIAQKLT-GRSGKSCRLRWFNQ 50
                     899****************************9.***********996 PP

2Myb_DNA-binding55.61.3e-1757100146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_013603727.1  57 RNPFTEEEEERLLASHRIHGNR-WSVIARFFP-GRTDNAVKNHWHV 100
                      789*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.471155IPR017930Myb domain
SMARTSM007175.2E-14453IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-30598IPR009057Homeodomain-like
PfamPF002499.4E-17550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-27658IPR009057Homeodomain-like
CDDcd001675.17E-13849No hitNo description
PROSITE profilePS5129418.71356106IPR017930Myb domain
SMARTSM007171.3E-1556104IPR001005SANT/Myb domain
PfamPF002491.7E-145799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2159104IPR009057Homeodomain-like
CDDcd001672.55E-125999No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMCSRGHWRP AEDKKLRELV QQFGPHNWNA IAQKLTGRSG KSCRLRWFNQ LDPRINRNPF  60
TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV IMARRGRERS KMRPRSLGHD  120
GTEAGPGMMG YKDCDKKRRL ATTIDINYPY SFSHINHFQI LKEFLTGKIG FCNSTTPINE  180
GPIDQTKRPM EFYNFLQVNT DSKKPEVIHN SRKDEEEEEV VVDNCVPFFD FLSVGNSASK  240
GLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-3121051104C-Myb DNA-Binding Domain
1msf_C2e-3121051104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195540.0AY519554.1 Arabidopsis thaliana MYB transcription factor (At1g17950) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603727.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A0D3DQ450.0A0A0D3DQ45_BRAOL; Uncharacterized protein
STRINGBra016575.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28182769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-158myb domain protein 52